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Laboratory for Computational
Biology and Bioinformatics



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The publications listed below are limited to those co-authored by members of the Laboratory for Computational Biology and Bioinformatics on work carried out at least in part during their association with the laboratory since its start in late 2006 to its closure at the end of 2016.

All Papers by Year                      Papers by Area

2017 (so far)

  • Doerr, D., and B.M.E. Moret, "Sequence-based synteny analysis of multiple large genomes," accepted, to appear as a chapter in Comparative Genomics, J.C. Setubal, J. Stoye, and P.F. Stadler, eds., Methods in Molecular Biology xx, Springer (2017).
  • Doerr, D., Kowada, L., de Araujo, F., Deshpande, Sh., Dantas, S., Moret, B.M.E., and J. Stoye, "New genome similarity measures based on conserved gene adjacencies," accepted, to appear in J. of Comput. Biol. (2017).
  • Ye, M., Racz, G., Jiang, Q., Zhang, X., and Moret, B.M.E., "NEMo, an evolutionary model with modularity for PPI networks," IEEE Trans. on NanoBioscience 16, 2, 131-139 (2017).
  • Ye, M, Zhang, X., and Moret, B.M.E., "Modularity in PPI networks: Characteristics of existing networks and models of evolution," Proc. 9th Conf. on Bioinformatics and Computational Biology BiCoB'17, 155-163 (2017). PDF

2016

2015

2014

2013

2012

2011

2010

2009

2008

2007

2006

  • Grimm, G., Renner, S., Stamatakis, A., and Hemleben, V., "A nuclear ribosomal DNA phylogeny of Acer inferred with maximum likelihood, splits graphs, and motif analysis of 606 sequences", Evolutionary Bioinformatics 2:7-22 (2006). PDF
  • Stamatakis, A., "RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models", Bioinformatics 22(21):2688-2690 (2006). PDF